MIDAS

MIning Differentially Activated Subpaths of KEGG pathways from multi-class RNA-seq data
Genomics Pathway

BRCA-Pathway

Web based TCGA Omics Data Mapping System on KEGG pathways
Genomics Pathway

In Silico experiment tool

In Silico experiment with three-level network Tool for User given Hypothesis of KO mouse
The online instant hypothesis web analyzer in slilico experiment tool.
Epigenomics Network

PINTnet

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Pathway Network

RDDpred

RDDpred: a condition-specific RNA-editing prediction model from RNA-seq data.
Prediction RNA

TimeTP

Influence maximization in time bounded networkidentifies transcription factors regulating perturbed pathways
Time-series Network

TimesVector

A vectorized clustering approach to the analysis of time series transcriptome data from multiple phenotypes
Time-series Clustering

Context-MMIA

Context-MMIA is miRNA - mRNA target prediction system combining expression data and literature data.
Predict RNA

ContextTRAP

ContextTRAP is novel approach for prioritizing pathways by utilizing both results from pathway analysis tools and the literature information.
Pathway

TRAP

Time-series RNA-seq Analysis Package
Time-series RNA

DegPack

Identifying DEGs in multiclass RNA-seq data
DEG RNA

SpliceHetero

A novel computational method to measure spliceome level intra-tumor heterogeneity (sITH) in breast cancer
Heterogenity Breast Cancer